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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_19182866_19182962_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19182866 - 19182962
Intron Length:
97

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
CTTCTCTCCACA
Flanking Amino Acid:
IFKGVFVHRYRDAIAEIRAI
Intron Amino Acid Position:
297

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
1
79.1
37.5
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
81.3
0.71
0.7
76
26.2
Minor 5ss
51
0.04
2.8
74.4
41.8
Minor BPS
48.6
-0.1
2
64.43
42.1

Associated Gene:

Gene:
STAG2
Ensembl Gene ID:
ENSAPLG00000011118
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026959
19168230 - 19206813
38584
ENSAPLT00000011721
19168230 - 19206813
38584