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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_19184516_19185027_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19184516 - 19185027
Intron Length:
512

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
TTCCCACCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTCAT
U12 Branch Point Sequence:
CTTTCCTTCATC
Flanking Amino Acid:
QAIKLLTLVLQSSEEVLTAE
Intron Amino Acid Position:
398

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
81.2
32.7
Major BPS
75
0.62
1.1
77.2
36
Major PPT
67.5
0.39
0.8
59.1
31.7
Minor 5ss
41.5
-0.9
2.8
57
41.2
Minor BPS
69.8
0.61
1.7
77.77
38.8

Associated Gene:

Gene:
STAG2
Ensembl Gene ID:
ENSAPLG00000011118
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026959
19168230 - 19206813
38584
ENSAPLT00000011721
19168230 - 19206813
38584