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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_19189152_19190169_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19189152 - 19190169
Intron Length:
1018

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTAA
5'SS Class:
strong_major
3'SS Sequence:
GTTGTTCTTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTTTTTCACC
Flanking Amino Acid:
EIYTTGRLEKHLDALLRQIR
Intron Amino Acid Position:
607

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
81
28.7
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
79.2
0.66
0.8
73.9
36.8
Minor 5ss
36
-1.6
3.3
46.2
49.1
Minor BPS
69.1
0.58
1.7
81.25
33.5

Associated Gene:

Gene:
STAG2
Ensembl Gene ID:
ENSAPLG00000011118
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026959
19168230 - 19206813
38584
ENSAPLT00000011721
19168230 - 19206813
38584