About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_19192539_19196400_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19192539 - 19196400
Intron Length:
3862

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTAAACAAA
5'SS Class:
major
3'SS Sequence:
TTCTTTTTAATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTCTTTTTAATA
Flanking Amino Acid:
TKVCLVPDVLAFTILCDVLM
Intron Amino Acid Position:
763

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.6
0.32
1.1
62.9
37
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
82.5
0.73
0.8
80.9
29.7
Minor 5ss
39.9
-1.1
3
49.6
42.2
Minor BPS
75.4
0.79
1.1
78
33.3

Associated Gene:

Gene:
STAG2
Ensembl Gene ID:
ENSAPLG00000011118
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026959
19168230 - 19206813
38584
ENSAPLT00000011721
19168230 - 19206813
38584