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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_19197169_19198270_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19197169 - 19198270
Intron Length:
1102

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTCGG
5'SS Class:
strong_major
3'SS Sequence:
GGATTTTTCCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
TTTGTTTGGATT
Flanking Amino Acid:
AADIFKQYMKYYNDYGDIIK
Intron Amino Acid Position:
868

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.1
0.99
0.8
72.7
44.5
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
69.7
0.44
0.9
61.9
44.2
Minor 5ss
33.6
-1.9
2.9
41.4
45
Minor BPS
53.4
0.19
1.5
74.31
37.3

Associated Gene:

Gene:
STAG2
Ensembl Gene ID:
ENSAPLG00000011118
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026959
19168230 - 19206813
38584
ENSAPLT00000011721
19168230 - 19206813
38584