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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_19202182_19202264_F

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19202182 - 19202264
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTACGTAAA
5'SS Class:
major
3'SS Sequence:
TGGTCTTTTTAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
TCATGTTTAAAA
Flanking Amino Acid:
PEHHQAPLDYNTQVTWMLAQ
Intron Amino Acid Position:
1126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
77.1
33.2
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
71.6
0.49
1.1
75.4
38.6
Minor 5ss
35.7
-1.6
2.9
41.8
39.2
Minor BPS
54.8
0.15
1.9
65
41.6

Associated Gene:

Gene:
STAG2
Ensembl Gene ID:
ENSAPLG00000011118
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011721
19168230 - 19206813
38584