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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_192034_195293_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
192034 - 195293
Intron Length:
3260

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGGAA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTAATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ATAATTTTAATT
Flanking Amino Acid:
KALSKSKYHSRSSASLKLKK
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
71.7
33.5
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
81.7
0.71
0.9
75.4
37.8
Minor 5ss
27.9
-2.5
3.5
37.1
47.5
Minor BPS
65.8
0.58
1.2
75.37
35.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026082
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024377
178177 - 195376
17200