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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_19203932_19206789_F

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19203932 - 19206789
Intron Length:
2858

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAGGTTAA
5'SS Class:
major
3'SS Sequence:
ACTTTCTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
CCATTTCTAACT
Flanking Amino Acid:
FDPASIMDESVLGVSMF*
Intron Amino Acid Position:
1233

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1.1
71.5
36.8
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
83.2
0.75
0.7
81.5
29.7
Minor 5ss
38.6
-1.3
3.1
48.8
47.3
Minor BPS
54.2
0.21
1.7
68.42
42.9

Associated Gene:

Gene:
STAG2
Ensembl Gene ID:
ENSAPLG00000011118
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026959
19168230 - 19206813
38584
ENSAPLT00000011721
19168230 - 19206813
38584