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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_19257749_19259141_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19257749 - 19259141
Intron Length:
1393

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGTGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTTGGCTTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTCAT
U12 Branch Point Sequence:
TTTGGCTTCACA
Flanking Amino Acid:
KTETGSWSAETAPGVHRRLF
Intron Amino Acid Position:
68

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.8
82.2
30
Major BPS
70
0.5
1.1
71.2
35.2
Major PPT
78.7
0.65
0.9
72.3
37.9
Minor 5ss
39
-1.2
2.7
51.8
44.8
Minor BPS
54.4
0.13
2.3
74.7
43.3

Associated Gene:

Gene:
SH2D1A
Ensembl Gene ID:
ENSAPLG00000012436
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012945
19245454 - 19261992
16539