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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_19257749_19260313_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19257749 - 19260313
Intron Length:
2565

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGTGTACT
5'SS Class:
strong_major
3'SS Sequence:
CTTTGGTTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACATAAT
U12 Branch Point Sequence:
AAGAACATAATT
Flanking Amino Acid:
KTETGSWSAEIFSVLEKKTT
Intron Amino Acid Position:
68

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.8
82.2
30
Major BPS
66.4
0.41
1.1
66.3
36.5
Major PPT
79.4
0.66
0.9
76.9
37.3
Minor 5ss
39
-1.2
2.7
51.8
44.8
Minor BPS
47.6
-0.1
1.8
62.82
40.8

Associated Gene:

Gene:
SH2D1A
Ensembl Gene ID:
ENSAPLG00000012436
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018384
19245454 - 19260355
14902