About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_192679_195293_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
192679 - 195293
Intron Length:
2615

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGGAA
5'SS Class:
strong_major
3'SS Sequence:
TGTCCTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAGTCAT
U12 Branch Point Sequence:
AGTCATACAACT
Flanking Amino Acid:
KALSKSKYHSRETTLSSSHS
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
71.7
33.5
Major BPS
64.7
0.37
1.2
67
39.8
Major PPT
82.2
0.72
0.8
73.3
37.1
Minor 5ss
27.9
-2.5
3.5
37.1
47.5
Minor BPS
44.5
-0.3
1.9
63.58
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026082
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022126
178177 - 195376
17200