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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_1926959_1928315_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1926959 - 1928315
Intron Length:
1357

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGCGT
5'SS Class:
strong_major
3'SS Sequence:
CATCCCCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTTCTCTTCATC
Flanking Amino Acid:
WIMLASLAKIGFHLYSKLPS
Intron Amino Acid Position:
112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
73.4
43.3
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
76.8
0.6
0.8
69.5
30.7
Minor 5ss
32.5
-2
3.4
47.7
47.8
Minor BPS
62.5
0.38
1.7
75.09
35.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008781
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009159
1926594 - 1928965
2372