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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_19271476_19272141_R

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19271476 - 19272141
Intron Length:
666

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTGTA
5'SS Class:
major
3'SS Sequence:
TTCTTGTGGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCCT
U12 Branch Point Sequence:
TTCTTGTGGACA
Flanking Amino Acid:
FICTIRYRQTGPLISRQIFR
Intron Amino Acid Position:
2007

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1.1
75.3
34.3
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
70.5
0.46
1.1
67.8
42.5
Minor 5ss
38.7
-1.3
3
49.8
46.5
Minor BPS
48.2
-0.1
2.2
66.22
40.5

Associated Gene:

Gene:
TENM1
Ensembl Gene ID:
ENSAPLG00000012443
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047306
19267486 - 19517366
249881
ENSAPLT00000045025
19267486 - 19517366
249881
ENSAPLT00000036284
19267486 - 19517366
249881
ENSAPLT00000013072
19267486 - 19517366
249881