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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_19276828_19282897_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19276828 - 19282897
Intron Length:
6070

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
ATCTTGTGTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
GTCTTCTTACCT
Flanking Amino Acid:
NISTFERRLRAHNRNLLSID
Intron Amino Acid Position:
1779

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
73.4
43.3
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
71.2
0.48
1
69.6
41
Minor 5ss
36.2
-1.6
3.5
48.3
47.3
Minor BPS
66.7
0.6
1.6
79.89
42.3

Associated Gene:

Gene:
TENM1
Ensembl Gene ID:
ENSAPLG00000012443
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045025
19267486 - 19517366
249881
ENSAPLT00000036284
19267486 - 19517366
249881
ENSAPLT00000013072
19267486 - 19517366
249881
ENSAPLT00000047306
19267486 - 19517366
249881