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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_19286304_19290908_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19286304 - 19290908
Intron Length:
4605

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTCCA
5'SS Class:
major
3'SS Sequence:
TCATGTGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
CTCACTTTAACA
Flanking Amino Acid:
SDENGWTTVYEYDSDGHLTN
Intron Amino Acid Position:
1642

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1.1
65.3
40.7
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
75.1
0.57
1
68.7
41.8
Minor 5ss
35.8
-1.6
2.8
39.3
39.7
Minor BPS
69.5
0.61
1.3
71.49
41.1

Associated Gene:

Gene:
TENM1
Ensembl Gene ID:
ENSAPLG00000012443
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045025
19267486 - 19517366
249881
ENSAPLT00000036284
19267486 - 19517366
249881
ENSAPLT00000013072
19267486 - 19517366
249881
ENSAPLT00000047306
19267486 - 19517366
249881