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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_19291420_19293209_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19291420 - 19293209
Intron Length:
1790

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGACAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
ATTACTAAAACT
Flanking Amino Acid:
KIDPNCDCFSGDGGYAKDAK
Intron Amino Acid Position:
1472

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
76.9
33.7
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
88.7
0.87
0.6
84.5
23.5
Minor 5ss
31.3
-2.1
3
38.6
46.4
Minor BPS
51.4
0.12
2
76.06
40.4

Associated Gene:

Gene:
TENM1
Ensembl Gene ID:
ENSAPLG00000012443
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036284
19267486 - 19517366
249881
ENSAPLT00000013072
19267486 - 19517366
249881
ENSAPLT00000047306
19267486 - 19517366
249881
ENSAPLT00000045025
19267486 - 19517366
249881