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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_19293577_19310802_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19293577 - 19310802
Intron Length:
17226

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGACACC
5'SS Class:
major
3'SS Sequence:
TTTGTTTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAA
U12 Branch Point Sequence:
TTCCTCTCAATT
Flanking Amino Acid:
SCDSGMDITQVRLEWPTDLT
Intron Amino Acid Position:
1350

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.5
0.48
1.1
63.1
41.8
Major BPS
73.4
0.58
0.9
75.3
29.7
Major PPT
87.2
0.84
0.8
80.5
37
Minor 5ss
38.6
-1.3
3.2
52.3
44.6
Minor BPS
62.3
0.46
1.5
77.15
39.7

Associated Gene:

Gene:
TENM1
Ensembl Gene ID:
ENSAPLG00000012443
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036284
19267486 - 19517366
249881
ENSAPLT00000013072
19267486 - 19517366
249881
ENSAPLT00000047306
19267486 - 19517366
249881
ENSAPLT00000045025
19267486 - 19517366
249881