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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_19310958_19323164_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19310958 - 19323164
Intron Length:
12207

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCATCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
CTTTCTTTCATC
Flanking Amino Acid:
ASEASLNSPRGITVDKHGFI
Intron Amino Acid Position:
1298

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
84.2
0.77
0.8
77.6
35.8
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
63.9
0.42
1.7
73.34
38.7

Associated Gene:

Gene:
TENM1
Ensembl Gene ID:
ENSAPLG00000012443
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047306
19267486 - 19517366
249881
ENSAPLT00000045025
19267486 - 19517366
249881
ENSAPLT00000036284
19267486 - 19517366
249881
ENSAPLT00000013072
19267486 - 19517366
249881