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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_19327568_19328507_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19327568 - 19328507
Intron Length:
940

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAGAA
5'SS Class:
strong_major
3'SS Sequence:
TCTGTCTTACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTTAAAC
Flanking Amino Acid:
SGNSIGILELRNRDTRHSTS
Intron Amino Acid Position:
1213

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
73.7
30.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
72.8
0.51
0.9
66.8
39.3
Minor 5ss
29.1
-2.4
3.4
37.8
47
Minor BPS
76.4
0.81
1.2
82.98
29.8

Associated Gene:

Gene:
TENM1
Ensembl Gene ID:
ENSAPLG00000012443
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047306
19267486 - 19517366
249881
ENSAPLT00000045025
19267486 - 19517366
249881
ENSAPLT00000013072
19267486 - 19517366
249881