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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_19328758_19333461_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19328758 - 19333461
Intron Length:
4704

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTCCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTGT
U12 Branch Point Sequence:
CTTCCTTTCCCT
Flanking Amino Acid:
NKHHVLNPQSGIVHKGNGEN
Intron Amino Acid Position:
1130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
77.1
37.8
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
77.8
0.63
0.7
77.2
24.9
Minor 5ss
37
-1.5
3
48.7
41.1
Minor BPS
41.8
-0.5
3.6
72.56
44.8

Associated Gene:

Gene:
TENM1
Ensembl Gene ID:
ENSAPLG00000012443
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045025
19267486 - 19517366
249881
ENSAPLT00000036284
19267486 - 19517366
249881
ENSAPLT00000013072
19267486 - 19517366
249881
ENSAPLT00000047306
19267486 - 19517366
249881