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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_19342589_19344331_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19342589 - 19344331
Intron Length:
1743

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGATGT
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATAAAAT
U12 Branch Point Sequence:
AAAATGAGAACA
Flanking Amino Acid:
YGYTISRQDGSFDLVAVGGI
Intron Amino Acid Position:
905

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.8
77.6
33.4
Major BPS
61.8
0.29
1.1
67.7
34.6
Major PPT
88
0.85
0.8
80.8
36.8
Minor 5ss
34.2
-1.8
3.2
47.6
47.9
Minor BPS
38.3
-0.8
2.1
46.64
35.6

Associated Gene:

Gene:
TENM1
Ensembl Gene ID:
ENSAPLG00000012443
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036284
19267486 - 19517366
249881
ENSAPLT00000013072
19267486 - 19517366
249881
ENSAPLT00000047306
19267486 - 19517366
249881
ENSAPLT00000045025
19267486 - 19517366
249881