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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_19351485_19365663_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19351485 - 19365663
Intron Length:
14179

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGATAC
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTGTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
ATTTCCTGAAGT
Flanking Amino Acid:
VCGDNLDNDGDGLTDCVDPD
Intron Amino Acid Position:
793

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
73.8
30.9
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
78
0.63
0.8
76.4
32.2
Minor 5ss
44.3
-0.6
2.8
58.5
46.3
Minor BPS
70.4
0.72
1.7
87.59
37.5

Associated Gene:

Gene:
TENM1
Ensembl Gene ID:
ENSAPLG00000012443
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045025
19267486 - 19517366
249881
ENSAPLT00000036284
19267486 - 19517366
249881
ENSAPLT00000013072
19267486 - 19517366
249881
ENSAPLT00000047306
19267486 - 19517366
249881