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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_19365811_19367651_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19365811 - 19367651
Intron Length:
1841

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTACTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
CTTTTTTTACTT
Flanking Amino Acid:
TIAHYLDAVRDGCPGLCYGN
Intron Amino Acid Position:
744

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99.2
1.16
0.6
97
9.5
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
85.8
0.8
0.7
78.7
34.8
Minor 5ss
46.1
-0.4
2.8
66.9
44.4
Minor BPS
63.2
0.49
1.6
78.3
39.3

Associated Gene:

Gene:
TENM1
Ensembl Gene ID:
ENSAPLG00000012443
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047306
19267486 - 19517366
249881
ENSAPLT00000036284
19267486 - 19517366
249881
ENSAPLT00000013072
19267486 - 19517366
249881