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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_19369192_19386775_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19369192 - 19386775
Intron Length:
17584

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCTGG
5'SS Class:
major
3'SS Sequence:
TAATCCTCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TATTTTGTAATC
Flanking Amino Acid:
PQWTGSDCSTELCTLDCGSH
Intron Amino Acid Position:
674

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
62.3
44.7
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
76.8
0.6
0.9
70.4
35.6
Minor 5ss
49.3
-0
2.5
64.5
46.9
Minor BPS
56.8
0.19
2
70.36
35.6

Associated Gene:

Gene:
TENM1
Ensembl Gene ID:
ENSAPLG00000012443
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045025
19267486 - 19517366
249881
ENSAPLT00000036284
19267486 - 19517366
249881
ENSAPLT00000013072
19267486 - 19517366
249881
ENSAPLT00000047306
19267486 - 19517366
249881