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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_19386977_19390693_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19386977 - 19390693
Intron Length:
3717

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTGAA
5'SS Class:
major
3'SS Sequence:
CACTGCTTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
ATGCTCTAAACT
Flanking Amino Acid:
PGYKGEICEEEDCLDPMCSG
Intron Amino Acid Position:
607

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
71.4
33.7
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
74.9
0.56
0.9
64.9
40.9
Minor 5ss
34.4
-1.8
2.9
40.7
45.6
Minor BPS
60.1
0.39
1.7
75.27
41.5

Associated Gene:

Gene:
TENM1
Ensembl Gene ID:
ENSAPLG00000012443
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047306
19267486 - 19517366
249881
ENSAPLT00000045025
19267486 - 19517366
249881
ENSAPLT00000036284
19267486 - 19517366
249881
ENSAPLT00000013072
19267486 - 19517366
249881