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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_19390889_19392015_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19390889 - 19392015
Intron Length:
1127

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCTCA
5'SS Class:
major
3'SS Sequence:
CTACCTTCTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTAAA
U12 Branch Point Sequence:
AGTACATTAAAA
Flanking Amino Acid:
PGFLGPDCAKDSCPVLCSGN
Intron Amino Acid Position:
542

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
70.5
36.3
Major BPS
70.2
0.5
1
71.6
30.1
Major PPT
79.7
0.67
0.8
77
31.4
Minor 5ss
44.2
-0.6
2.8
57.5
46.7
Minor BPS
55.6
0.17
1.7
66.72
38.4

Associated Gene:

Gene:
TENM1
Ensembl Gene ID:
ENSAPLG00000012443
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036284
19267486 - 19517366
249881
ENSAPLT00000013072
19267486 - 19517366
249881
ENSAPLT00000047306
19267486 - 19517366
249881
ENSAPLT00000045025
19267486 - 19517366
249881