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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_19392118_19395624_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
19392118 - 19395624
Intron Length:
3507

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
TCTGAATAAATAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTCTGAA
U12 Branch Point Sequence:
ACTCTCTGAATA
Flanking Amino Acid:
EQVFVLTTAIEVLDDCSTNC
Intron Amino Acid Position:
508

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
76.1
32.7
Major BPS
69.8
0.49
1
61
37.5
Major PPT
57.3
0.16
1
52.1
40.7
Minor 5ss
33.9
-1.8
2.9
38.9
40.1
Minor BPS
57.5
0.23
1.4
63.68
36.6

Associated Gene:

Gene:
TENM1
Ensembl Gene ID:
ENSAPLG00000012443
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045025
19267486 - 19517366
249881
ENSAPLT00000036284
19267486 - 19517366
249881
ENSAPLT00000013072
19267486 - 19517366
249881
ENSAPLT00000047306
19267486 - 19517366
249881