About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_19402824_19413757_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19402824 - 19413757
Intron Length:
10934

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGCCTC
5'SS Class:
major
3'SS Sequence:
TCATTTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
CATCAATTAATT
Flanking Amino Acid:
TLALLLAYVIAVHLFGLTWQ
Intron Amino Acid Position:
320

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
67.4
44
Major BPS
83
0.82
0.8
82
24.9
Major PPT
88.3
0.86
0.7
84.1
30.5
Minor 5ss
42.9
-0.8
3.1
60.8
43.7
Minor BPS
51.2
0.11
1.8
69.19
41.2

Associated Gene:

Gene:
TENM1
Ensembl Gene ID:
ENSAPLG00000012443
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045025
19267486 - 19517366
249881
ENSAPLT00000036284
19267486 - 19517366
249881
ENSAPLT00000013072
19267486 - 19517366
249881
ENSAPLT00000047306
19267486 - 19517366
249881