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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_19413997_19427081_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19413997 - 19427081
Intron Length:
13085

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGACC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TGGTTTTTACAA
Flanking Amino Acid:
VLNSNIPLETRHFLFKHGSG
Intron Amino Acid Position:
240

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
72.2
37.3
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
87.6
0.85
0.6
84.2
23.7
Minor 5ss
39.6
-1.2
3
52.3
44.6
Minor BPS
49.8
-0
1.7
60.33
40

Associated Gene:

Gene:
TENM1
Ensembl Gene ID:
ENSAPLG00000012443
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045025
19267486 - 19517366
249881
ENSAPLT00000036284
19267486 - 19517366
249881
ENSAPLT00000013072
19267486 - 19517366
249881
ENSAPLT00000047306
19267486 - 19517366
249881