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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_19427323_19484387_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19427323 - 19484387
Intron Length:
57065

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAATAAAG
5'SS Class:
major
3'SS Sequence:
TGTGTCGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAAAA
U12 Branch Point Sequence:
AAACAATAAGCC
Flanking Amino Acid:
DHERKSDGENDMPGSPHNQF
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1
66.2
39
Major BPS
68.1
0.45
1
73.5
28.6
Major PPT
77.2
0.61
1
73.4
41.9
Minor 5ss
33
-1.9
2.9
37.5
41.1
Minor BPS
37.4
-0.9
1.9
43.32
36.5

Associated Gene:

Gene:
TENM1
Ensembl Gene ID:
ENSAPLG00000012443
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045025
19267486 - 19517366
249881
ENSAPLT00000036284
19267486 - 19517366
249881
ENSAPLT00000013072
19267486 - 19517366
249881