About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_19427323_19517087_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19427323 - 19517087
Intron Length:
89765

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATCAT
5'SS Class:
strong_major
3'SS Sequence:
TGTGTCGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAAAA
U12 Branch Point Sequence:
AAACAATAAGCC
Flanking Amino Acid:
KRKTIDQSTQDMPGSPHNQF
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
80.3
34.3
Major BPS
68.1
0.45
1
73.5
28.6
Major PPT
77.2
0.61
1
73.4
41.9
Minor 5ss
35.2
-1.7
3.1
49.5
46.7
Minor BPS
37.4
-0.9
1.9
43.32
36.5

Associated Gene:

Gene:
TENM1
Ensembl Gene ID:
ENSAPLG00000012443
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047306
19267486 - 19517366
249881