Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_1951452_1955139_R

Intron Information:

Intron Rank:

138899

Intron Class:

major

Intron Phase:

Intron Coordinates:

1951452 - 1955139

Intron Length:

3688

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGGGCT

5'SS Class:

strong_major

3'SS Sequence:

CTCCACATTATAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AAATGAT

U12 Branch Point Sequence:

TTTTTCTCCACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.1

0.76

72.2

37.3

Major BPS

0.45

57.8

Major PPT

68.7

0.42

0.9

61.6

33.2

Minor 5ss

37.9

-1.4

3.6

56.2

48.2

Minor BPS

61.2

0.35

79.1

37.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000022228

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034444

1949674 - 1955222

5549