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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_20014781_20049970_R

Intron Information:

Intron Rank:
150127
Intron Class:
major
Intron Phase:
Intron Coordinates:
20014781 - 20049970
Intron Length:
35190

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTGTG
5'SS Class:
major
3'SS Sequence:
GTCTCCTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
CAGATCTGAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.1
69.5
41.3
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
81.7
0.71
0.8
72.8
37.4
Minor 5ss
39.2
-1.2
3.4
59.1
45.3
Minor BPS
49.2
-0
1.5
53.55
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028340
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036350
20014752 - 20050461
35710