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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_20050040_20070336_R

Intron Information:

Intron Rank:
150126
Intron Class:
major
Intron Phase:
Intron Coordinates:
20050040 - 20070336
Intron Length:
20297

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAAAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCACTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTTTTTCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
71.6
40.1
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
84.3
0.77
0.7
82.6
28
Minor 5ss
31.4
-2.1
3.1
39
46.4
Minor BPS
72.2
0.78
1.7
90.89
33.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028340
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034965
20048663 - 20070672
22010