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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_20077234_20083416_R

Intron Information:

Intron Rank:
153832
Intron Class:
major
Intron Phase:
Intron Coordinates:
20077234 - 20083416
Intron Length:
6183

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTCCCAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
CAACTAATAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.8
1.13
0.8
81.8
38.5
Major BPS
80
0.75
1
78.6
31
Major PPT
75.6
0.58
1
75.5
33.3
Minor 5ss
33.5
-1.9
4
48.7
47.5
Minor BPS
44.5
-0.3
1.8
57.53
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030255
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042715
20077039 - 20091214
14176