Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_20095315_20167882_R

Intron Information:

Intron Rank:

141073

Intron Class:

major

Intron Phase:

Intron Coordinates:

20095315 - 20167882

Intron Length:

72568

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGAAGC

5'SS Class:

strong_major

3'SS Sequence:

TTTTCTTTTGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ACTTAAT

U12 Branch Point Sequence:

ATTGACTTAATC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.73

69.9

41.1

Major BPS

78.2

0.7

77.9

32.1

Major PPT

95.8

1.03

0.5

92.1

18.3

Minor 5ss

32.4

-2

3.2

43.2

Minor BPS

65.8

0.48

1.6

73.71

37.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000023229

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024067

20095148 - 20168875

73728