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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_20145665_20148803_R

Intron Information:

Intron Rank:
134475
Intron Class:
major
Intron Phase:
Intron Coordinates:
20145665 - 20148803
Intron Length:
3139

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAACCTCC
5'SS Class:
major
3'SS Sequence:
GTCTGCTTTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
CTTGCTCTAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.2
66.7
40.1
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
74.4
0.55
0.9
65.6
41
Minor 5ss
52.4
0.08
2.4
69.1
41.7
Minor BPS
54.8
0.15
1.8
67.2
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019637
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045498
20144798 - 20149335
4538