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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_20169245_20170505_R

Intron Information:

Intron Rank:
141074
Intron Class:
major
Intron Phase:
Intron Coordinates:
20169245 - 20170505
Intron Length:
1261

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGACAG
5'SS Class:
strong_major
3'SS Sequence:
CTTCACCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAC
U12 Branch Point Sequence:
CTTTCCTTCACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.9
71.6
40.1
Major BPS
78.7
0.71
0.9
69.3
37.7
Major PPT
72.7
0.51
0.8
65.9
29.7
Minor 5ss
31.3
-2.1
3.1
38.3
46.6
Minor BPS
74.6
0.76
1.7
82.21
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023229
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046388
20168066 - 20170678
2613