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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_2028173_2031072_F

Intron Information:

Intron Rank:
147009
Intron Class:
major
Intron Phase:
Intron Coordinates:
2028173 - 2031072
Intron Length:
2900

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGCGGTTC
5'SS Class:
major
3'SS Sequence:
TCATCTCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
AAGCATCTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.6
0.46
1
62.8
38.2
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
82.5
0.73
0.8
77
31.4
Minor 5ss
34.9
-1.7
3.6
46.1
44.8
Minor BPS
47.2
-0.1
1.8
63.16
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029182
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045719
2027718 - 2032142
4425