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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_20290468_20293888_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
20290468 - 20293888
Intron Length:
3421

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CTG|GCAGATGGA
5'SS Class:
major
3'SS Sequence:
CATCCACAAAGAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
GCTTTTTTGATC
Flanking Amino Acid:
ISLYLISKLFVPPGQTVNA
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.1
0.43
1.2
61.8
39.2
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
44.7
-0.3
1.7
44.3
35.3
Minor 5ss
19.8
-3.5
4
28
38.7
Minor BPS
62.1
0.36
1.2
64.88
35.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020073
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026513
20290060 - 20293915
3856