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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_20353540_20355673_F

Intron Information:

Intron Rank:
146431
Intron Class:
major
Intron Phase:
Intron Coordinates:
20353540 - 20355673
Intron Length:
2134

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAGGGAAA
5'SS Class:
major
3'SS Sequence:
TCCCCTGTCCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TGTCTTTCAAAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.1
67.6
39.2
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
68.1
0.41
0.8
60.5
35.3
Minor 5ss
30.3
-2.3
3.3
35.3
43.5
Minor BPS
49.8
-0
1.6
61.96
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028901
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046141
20353461 - 20357385
3925