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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_20376714_20378892_R

Intron Information:

Intron Rank:
148146
Intron Class:
major
Intron Phase:
Intron Coordinates:
20376714 - 20378892
Intron Length:
2179

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTATGGGTA
5'SS Class:
major
3'SS Sequence:
TTGTGTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
TTGTGTTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1
67.5
37.4
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
85.5
0.8
0.9
79.9
37.7
Minor 5ss
39
-1.2
3.6
51.6
47.5
Minor BPS
54.2
0.13
2.1
70.62
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026993
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044746
20373172 - 20405722
32551