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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_20379211_20405360_R

Intron Information:

Intron Rank:
148147
Intron Class:
major
Intron Phase:
Intron Coordinates:
20379211 - 20405360
Intron Length:
26150

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
TCATTCCCATTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.8
78.2
31.2
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
88.9
0.88
0.6
88.5
21
Minor 5ss
27.1
-2.6
3
33
42.4
Minor BPS
42.3
-0.6
1.9
51.53
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026993
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044746
20373172 - 20405722
32551