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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_20423539_20424735_R

Intron Information:

Intron Rank:
148138
Intron Class:
major
Intron Phase:
Intron Coordinates:
20423539 - 20424735
Intron Length:
1197

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGACAT
5'SS Class:
strong_major
3'SS Sequence:
TTTGAACTTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAA
U12 Branch Point Sequence:
TATCTTTGAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
71.6
40.1
Major BPS
74.8
0.62
1
67
39.8
Major PPT
74.8
0.56
0.9
71.3
39.5
Minor 5ss
32.2
-2
3.4
46.9
48.4
Minor BPS
64.5
0.53
1.4
79.33
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026993
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039089
20423153 - 20426527
3375
ENSAPLT00000035644
20423153 - 20426527
3375