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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_20425575_20425729_R

Intron Information:

Intron Rank:
148142
Intron Class:
major
Intron Phase:
Intron Coordinates:
20425575 - 20425729
Intron Length:
155

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATTGAG
5'SS Class:
strong_major
3'SS Sequence:
TCCATTGACTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAA
U12 Branch Point Sequence:
CTTCCATTGACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
70.3
35.7
Major BPS
73.4
0.58
0.9
75.3
29.7
Major PPT
67.1
0.39
1
65
40.3
Minor 5ss
26.7
-2.7
3
31.1
43
Minor BPS
65.8
0.58
1.7
82.3
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026993
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039089
20423153 - 20426527
3375