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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_20503_35661_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
20503 - 35661
Intron Length:
15159

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGGTC
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTTTAAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TATTTTTTAAAG
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
75.5
34.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
80.5
0.69
1
82.4
32.9
Minor 5ss
32.4
-2
3.9
48.7
47.8
Minor BPS
67.6
0.41
1.4
69.32
37.9

Associated Gene:

Gene:
ZC3H12B
Ensembl Gene ID:
ENSAPLG00000003874
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003967
20417 - 43859
23443