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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_20512320_20514090_F

Intron Information:

Intron Rank:
138373
Intron Class:
major
Intron Phase:
Intron Coordinates:
20512320 - 20514090
Intron Length:
1771

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
TTTTTATACGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTGTTTTTATAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
72.1
39.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
81.7
0.71
0.9
78.2
34.2
Minor 5ss
37.3
-1.4
2.7
48
41.7
Minor BPS
55.2
0.14
1.7
66.59
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024459
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041418
20511849 - 20514754
2906