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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_20526653_20527336_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20526653 - 20527336
Intron Length:
684

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTATGTTGA
5'SS Class:
major
3'SS Sequence:
TTTTCCTTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTTGCTGGAATT
Flanking Amino Acid:
KKKRGSKVTSSQKRKADLAT
Intron Amino Acid Position:
1013

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1
68
39.7
Major BPS
83
0.82
0.8
82
24.9
Major PPT
89.8
0.9
0.6
89.2
19.6
Minor 5ss
46.1
-0.4
2.5
58
46.6
Minor BPS
49.3
0.03
2.2
76.06
41.4

Associated Gene:

Gene:
SMARCA1
Ensembl Gene ID:
ENSAPLG00000013149
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013756
20526581 - 20555327
28747
ENSAPLT00000024184
20526581 - 20555327
28747
ENSAPLT00000022075
20526581 - 20555327
28747