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Intron Name: Anas_platyrhynchos_platyrhynchos_10_20527448_20532310_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20527448 - 20532310

Intron Length:

4863

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAGGTATC

5'SS Class:

strong_major

3'SS Sequence:

TCTGTTTCCTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATATAAT

U12 Branch Point Sequence:

ATGCATATAATA

Flanking Amino Acid:

DWFIKSRTAMEFQRRCNTLI

Intron Amino Acid Position:

976

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.7

0.73

77.9

36.8

Major BPS

0.72

78.4

31.2

Major PPT

82.1

0.72

0.8

80.6

31.5

Minor 5ss

-1.2

3.1

50.7

40.4

Minor BPS

46.9

-0.2

1.7

57.16

35.9

Associated Gene:

Gene:

SMARCA1

Ensembl Gene ID:

ENSAPLG00000013149

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024184

20526581 - 20555327

28747

ENSAPLT00000022075

20526581 - 20555327

28747

ENSAPLT00000013756

20526581 - 20555327

28747