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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_20532857_20533793_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20532857 - 20533793
Intron Length:
937

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCTGTATC
5'SS Class:
major
3'SS Sequence:
ATTTTGTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
TATTTTACAAAT
Flanking Amino Acid:
KSPEEVIEYSAVFWERCNEL
Intron Amino Acid Position:
865

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.3
77.9
36.9
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
83.4
0.75
0.8
81.7
35.4
Minor 5ss
41.8
-0.9
2.6
54.4
42.8
Minor BPS
48.4
-0
1.8
71.5
39

Associated Gene:

Gene:
SMARCA1
Ensembl Gene ID:
ENSAPLG00000013149
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024184
20526581 - 20555327
28747
ENSAPLT00000022075
20526581 - 20555327
28747
ENSAPLT00000013756
20526581 - 20555327
28747